Sacred lotus closest to ancestor of flowering plants

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This video from India says about itself:

Fruit and unripe seed pod of lotus or Nelumbo nucifera

Dec 19, 2012

Nelumbo nucifera, known by a number of names including Indian lotus, sacred lotus, bean of India, or simply lotus, is a plant in the monotypic family Nelumbonaceae. The Linnaean binomial Nelumbo nucifera (Gaertn.) is the currently recognized name for this species, which has been classified under the former names, Nelumbium speciosum (Willd.) and Nymphaea nelumbo, among others. Names other than Nelumbo nucifera (Gaertn.) are obsolete synonyms and should not be used in current works.

This plant is an aquatic perennial. Under favorable circumstances its seeds may remain viable for many years, with the oldest recorded lotus germination being from that of seeds 1,300 years old recovered from a dry lakebed in northeastern China.

A common misconception is referring to the lotus as a water lily (Nymphaea), an entirely different plant, as can be seen in the center of the flowers, which lack the structure that goes on to form the distinctive circular seed pod in the Nelumbo nucifera.

Native to Tropical Asian nations and Queensland, Australia, it is commonly cultivated in water gardens. It is also the national flower of India and Vietnam.

This footage is part of the professionally-shot broadcast stock footage archive of Wilderness Films India Ltd., the largest collection of imagery from South Asia.

From Big News Network (ANI), Saturday 11th May, 2013:

Sacred lotus bears closest resemblance to ancestor of flowering plants

A team of researchers has reported that they have sequenced the sacred lotus genome, and the results offer insight into the heart of some of its mysteries.

The sacred lotus (Nelumbo nucifera) is a symbol of spiritual purity and longevity. Its seeds can survive up to 1,300 years, its petals and leaves repel grime and water, and its flowers generate heat to attract pollinators.

The sequence reveals that of all the plants sequenced so far – and there are dozens – sacred lotus bears the closest resemblance to the ancestor of all eudicots, a broad category of flowering plants that includes apple, cabbage, cactus, coffee, cotton, grape, melon, peanut, poplar, soybean, sunflower, tobacco and tomato.

The plant lineage that includes the sacred lotus forms a separate branch of the eudicot family tree, and so lacks a signature triplication of the genome seen in most other members of this family, said University of Illinois plant biology and Institute for Genomic Biology professor Ray Ming, who led the analysis with Jane Shen-Miller, a plant and biology professor at the University of California at Los Angeles (who germinated a 1,300-year-old sacred lotus seed); and Shaohua Li, director of the Wuhan Botanical Garden at the Chinese Academy of Sciences.

“Whole-genome duplications – the doubling, tripling (or more) of an organism’s entire genetic endowment – are an important events in plant evolution,” Ming said.

Some of the duplicated genes retain their original structure and function, and so produce more of a given gene product – a protein, for example, he said. Some gradually adapt new forms to take on new functions. If those changes are beneficial, the genes persist; if they’re harmful, they disappear from the genome.

Many agricultural crops benefit from genome duplications, including banana, papaya, sugarcane, strawberry, watermelon and wheat, said Robert VanBuren, a graduate student in Ming’s lab and collaborator on the study.

Although it lacks the 100 million-year-old triplication of its genome seen in most other eudicots, sacred lotus experienced a separate, whole-genome duplication about 65 million years ago, the researchers found. A large proportion of the duplicated genes (about 40 percent) have been retained, they reported.

“A neat thing about the duplication is that we can look at the genes that were retained and see if they are in specific pathways,” VanBuren said.

The researchers found evidence that duplicated genes related to wax formation (which allows the plant to repel water and remain clean) and survival in a mineral-starved watery habitat were retained, for example.

By looking at changes in the duplicated genes, the researchers found that lotus has a slow mutation rate relative to other plants, Ming said.

These traits make lotus an ideal reference plant for the study of other eudicots, the researchers said.

The researchers reported their finding in the journal Genome Biology.

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